Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802569.9al.171d with 18 members (Derived by automated computational analysis using gene prediction method Gnomon)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini /

Simiiformes /

Completeness score: 0.90

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

49.7%

This HOG has 652 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0792936	Opisthokonta	1599		90.6%	2
HOG:E0990910	Bacteria	1505		62.9%	2
HOG:E0793508	Opisthokonta	902		70.0%	2
HOG:E0802764	Eukaryota	759		90.3%	2
HOG:E0630358	Endopterygota	662		77.5%	2
HOG:E0892616	g__Streptomyces	643		18.4%	2
HOG:E0979077	f__Enterobacteriaceae	534		39.0%	2
HOG:E0818811	Eukaryota	395		29.4%	2
HOG:E0807613	Eukaryota	277		80.1%	2
HOG:E0531201	Mollusca	210		82.4%	2
HOG:E0018397	Archaea	188		84.0%	2
HOG:E0935229	c__Bacilli	181		16.6%	2
HOG:E1034370	LUCA	179		57.5%	2
HOG:E0967548	f__Burkholderiaceae	176		7.4%	2
HOG:E0935310	c__Bacilli	162		53.1%	2
HOG:E0809185	Eukaryota	161		50.9%	2
HOG:E0018091	Archaea	134		96.3%	2
HOG:E0854962	p__Planctomycetota	134		41.8%	2
HOG:E0814042	Eukaryota	131		48.1%	2
HOG:E0808140	Eukaryota	126		77.8%	2
HOG:E0396140	Basidiomycota	111		67.6%	2
HOG:E0878455	c__Clostridia	105		49.5%	2
HOG:E0483926	Fungi	102		8.8%	2
HOG:E0018310	Archaea	99		59.6%	2
HOG:E0483822	Fungi	99		65.7%	2

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